# RGD-PIPELINE: ftp-file-extracts
# MODULE: orthologs-version-2020-01-15
# GENERATED-ON: 2023/05/19
# RGD Ortholog FTP file
# From: RGD
# URL: http://rgd.mcw.edu
# Contact: RGD.Data@mcw.edu
#
### As of Dec 19 2011 v. 2.0.1: no data changes; improved internal QC.
### As of Feb 11 2013 v. 2.1.0: added column HUMAN_ORTHOLOG_HGNC_ID as the last column in the file
### As of Feb 4 2015 v. 2.1.1: updated description in header
#
# Format:
# Comment lines begin with '#'
# Tab delimited fields, one line per rat gene.
# Fields in order:
# 1. RAT_GENE_SYMBOL
# 2. RAT_GENE_RGD_ID
# 3. RAT_GENE_NCBI_GENE_ID
# 4. HUMAN_ORTHOLOG_SYMBOL - human ortholog(s) to rat gene
# 5. HUMAN_ORTHOLOG_RGD_ID
# 6. HUMAN_ORTHOLOG_NCBI_GENE_ID
# 7. HUMAN_ORTHOLOG_SOURCE - RGD or HGNC
# 8. MOUSE_ORTHOLOG_SYMBOL - mouse ortholog(s) to rat gene
# 9. MOUSE_ORTHOLOG_RGD_ID
#10. MOUSE_ORTHOLOG_NCBI_GENE_ID
#11. MOUSE_ORTHOLOG_MGI_ID
#12. MOUSE_ORTHOLOG_SOURCE - RGD or MGI
#13. HUMAN_ORTHOLOG_HGNC_ID
#
# Most orthologs listed will be one-to-one-to-one across all three species.
# Where multiple human or mouse homologs are present in RGD the human and mouse
# fields will contain multiple entries separated by '|'.
#
# There may not be a curated ortholog for human or mouse in which case the fields
# for the respective species will be blank
#
# Multiple orthologs may be redundant when assigned by both RGD and MGI. These will
# be resolved over time.
#
# SOURCE fields will be either 'RGD', for orthologs manually created by RGD curators,
# or 'HGNC' for ortholog data derived from the HGNC Comparison of Orthology Predictions (HCOP) data compiled by:
# HUGO Gene Nomenclature Committee, European Bioinformatics Institute (EMBL-EBI)
# Wellcome Trust Genome Campus, Hinxton, Cambridge, UK
# URL:  http://www.genenames.org/
#
# Reference for HGNC and HCOP:
# Gray KA, Yates B, Seal RL, Wright MW, Bruford EA. 
# Genenames.org: the HGNC resources in 2015.
# Nucleic Acids Res. 2015 Jan 28;43(Database issue):D1079-85. 
# PMID: 25361968,  doi: 10.1093/nar/gku1071.
#
RAT_GENE_SYMBOL	RAT_GENE_RGD_ID	RAT_GENE_NCBI_GENE_ID	HUMAN_ORTHOLOG_SYMBOL	HUMAN_ORTHOLOG_RGD	HUMAN_ORTHOLOG_NCBI_GENE_ID	HUMAN_ORTHOLOG_SOURCE	MOUSE_ORTHOLOG_SYMBOL	MOUSE_ORTHOLOG_RGD	MOUSE_ORTHOLOG_NCBI_GENE_ID	MOUSE_ORTHOLOG_MGI	MOUSE_ORTHOLOG_SOURCE	HUMAN_ORTHOLOG_HGNC_ID
Cdhr18	1565725	289926	CDHR18P	38652534	100130345	Ortholog	Cdhr18	1615657	238939	MGI:2685127	Transitive Ortholog Pipeline	HGNC:53742
Hapstr2	1560171	367949	HAPSTR2	38668552	389895	Ortholog	Gm715	1622865	279618	MGI:2685561	Transitive Ortholog Pipeline	HGNC:55138
LOC100125384	1642415	100125384	AC099730.1	16553205	100631258	Ortholog	4933405O20Rik	1617305	243996	MGI:2142174	Transitive Ortholog Pipeline	
LOC102548041	7565604	102548041	LOC105371153	38630812	105371153	Ortholog	4933440M02Rik	5685468	71208	MGI:1918458	Transitive Ortholog Pipeline	
RGD1308065	1308065	287935	AP000553.5	16570462	107985532	Ortholog	2610318N02Rik	1317621	70458	MGI:1917708	Transitive Ortholog Pipeline	
Scpppq1	2323137	100359907	SCPPPQ1	38624342	105377321	Ortholog	Gm17660	5144823	100271704	MGI:4937294	Transitive Ortholog Pipeline	
Smim10l2a	9296500	103694491	SMIM10L2A	1605492	399668	Ortholog	Smim10l2a	1620470	320237	MGI:2443645	Transitive Ortholog Pipeline	HGNC:34499
Trcg1	1587473	691110	AC113208.3	16562871	105376731	Ortholog	Trcg1	1617137	541610	MGI:3576664	Transitive Ortholog Pipeline